Detailed information of SNP:
|
SNP ID:
sf1219788732(Gbrowse)
Chromosome: chr12 Position: 19788732 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1322 | 63.09% | 36.91% |
| All Indica | 740 | 40.68% | 59.32% |
| All Japonica | 472 | 96.19% | 3.81% |
| Aus | 57 | 68.42% | 31.58% |
| Indica I | 340 | 41.18% | 58.82% |
| Indica II | 199 | 37.19% | 62.81% |
| Indica Intermediate | 201 | 43.28% | 56.72% |
| Temperate Japonica | 317 | 95.58% | 4.42% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 61 | 95.08% | 4.92% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 39 | 71.79% | 28.21% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1219788732 | G->A | LOC_Os12g32800(LOC_Os12g32800.1) | INTRON |