Detailed information of SNP:
|
SNP ID:
sf1219791060(Gbrowse)
Chromosome: chr12 Position: 19791060 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1413 | 94.76% | 5.24% |
| All Indica | 796 | 93.47% | 6.53% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 66 | 68.18% | 31.82% |
| Indica I | 375 | 94.67% | 5.33% |
| Indica II | 213 | 94.37% | 5.63% |
| Indica Intermediate | 208 | 90.38% | 9.62% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 97.50% | 2.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1219791060 | A->G | LOC_Os12g32800(LOC_Os12g32800.1) | Non-Synonymous SNP |