Detailed information of SNP:
|
SNP ID:
sf1219792749(Gbrowse)
Chromosome: chr12 Position: 19792749 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1398 | 55.94% | 44.06% |
| All Indica | 787 | 84.88% | 15.12% |
| All Japonica | 489 | 5.73% | 94.27% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 369 | 85.37% | 14.63% |
| Indica II | 209 | 88.52% | 11.48% |
| Indica Intermediate | 209 | 80.38% | 19.62% |
| Temperate Japonica | 328 | 6.10% | 93.90% |
| Tropical Japonica | 94 | 3.19% | 96.81% |
| Japonica Intermediate | 67 | 7.46% | 92.54% |
| Group VI/Aromatic | 13 | 7.69% | 92.31% |
| Intermediate | 42 | 45.24% | 54.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1219792749 | A->G | LOC_Os12g32800(LOC_Os12g32800.1) | Non-Synonymous SNP |