Detailed information of SNP:
|
SNP ID:
sf1219792790(Gbrowse)
Chromosome: chr12 Position: 19792790 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1398 | 56.65% | 43.35% |
| All Indica | 784 | 83.80% | 16.20% |
| All Japonica | 491 | 9.78% | 90.22% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 370 | 83.78% | 16.22% |
| Indica II | 208 | 86.54% | 13.46% |
| Indica Intermediate | 206 | 81.07% | 18.93% |
| Temperate Japonica | 330 | 9.70% | 90.30% |
| Tropical Japonica | 94 | 8.51% | 91.49% |
| Japonica Intermediate | 67 | 11.94% | 88.06% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 45.24% | 54.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1219792790 | T->C | LOC_Os12g32800(LOC_Os12g32800.1) | Non-Synonymous SNP |