Detailed information of SNP:
|
SNP ID:
sf1219801518(Gbrowse)
Chromosome: chr12 Position: 19801518 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 67.98% | 32.02% |
| All Indica | 799 | 92.24% | 7.76% |
| All Japonica | 497 | 32.39% | 67.61% |
| Aus | 67 | 64.18% | 35.82% |
| Indica I | 375 | 94.93% | 5.07% |
| Indica II | 213 | 96.24% | 3.76% |
| Indica Intermediate | 211 | 83.41% | 16.59% |
| Temperate Japonica | 335 | 40.90% | 59.10% |
| Tropical Japonica | 94 | 3.19% | 96.81% |
| Japonica Intermediate | 68 | 30.88% | 69.12% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 41 | 51.22% | 48.78% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1219801518 | C->T | LOC_Os12g32814(LOC_Os12g32814.1) | INTRON |