Detailed information of SNP:
|
SNP ID:
sf1219816657(Gbrowse)
Chromosome: chr12 Position: 19816657 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1330 | 69.70% | 30.30% |
| All Indica | 717 | 50.63% | 49.37% |
| All Japonica | 495 | 99.39% | 0.61% |
| Aus | 67 | 52.24% | 47.76% |
| Indica I | 346 | 69.36% | 30.64% |
| Indica II | 185 | 10.81% | 89.19% |
| Indica Intermediate | 186 | 55.38% | 44.62% |
| Temperate Japonica | 334 | 99.40% | 0.60% |
| Tropical Japonica | 93 | 98.92% | 1.08% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 37 | 64.86% | 35.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1219816657 | G->A | INTERGENIC | None |