Detailed information of SNP:
|
SNP ID:
sf1219817259(Gbrowse)
Chromosome: chr12 Position: 19817259 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 61.82% | 38.18% |
| All Indica | 797 | 43.91% | 56.09% |
| All Japonica | 497 | 97.59% | 2.41% |
| Aus | 67 | 4.48% | 95.52% |
| Indica I | 374 | 63.10% | 36.90% |
| Indica II | 212 | 6.13% | 93.87% |
| Indica Intermediate | 211 | 47.87% | 52.13% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1219817259 | G->C | INTERGENIC | None |