Detailed information of SNP:
|
SNP ID:
sf1219819158(Gbrowse)
Chromosome: chr12 Position: 19819158 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 86.88% | 13.12% |
| All Indica | 799 | 99.00% | 1.00% |
| All Japonica | 497 | 70.42% | 29.58% |
| Aus | 66 | 62.12% | 37.88% |
| Indica I | 375 | 98.40% | 1.60% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 60.90% | 39.10% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 76.47% | 23.53% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1219819158 | T->G | LOC_Os12g32840(LOC_Os12g32840.1) | Non-Synonymous SNP |