Detailed information of SNP:
|
SNP ID:
sf1219822148(Gbrowse)
Chromosome: chr12 Position: 19822148 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1413 | 62.35% | 37.65% |
| All Indica | 794 | 84.38% | 15.62% |
| All Japonica | 497 | 30.99% | 69.01% |
| Aus | 67 | 50.75% | 49.25% |
| Indica I | 373 | 81.50% | 18.50% |
| Indica II | 211 | 93.84% | 6.16% |
| Indica Intermediate | 210 | 80.00% | 20.00% |
| Temperate Japonica | 335 | 40.30% | 59.70% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 25.00% | 75.00% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 41 | 51.22% | 48.78% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1219822148 | C->T | LOC_Os12g32850(LOC_Os12g32850.1) | INTRON |