Detailed information of SNP:
|
SNP ID:
sf1219829358(Gbrowse)
Chromosome: chr12 Position: 19829358 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1411 | 59.46% | 40.54% |
| All Indica | 797 | 39.77% | 60.23% |
| All Japonica | 493 | 95.94% | 4.06% |
| Aus | 65 | 10.77% | 89.23% |
| Indica I | 375 | 29.07% | 70.93% |
| Indica II | 212 | 52.36% | 47.64% |
| Indica Intermediate | 210 | 46.19% | 53.81% |
| Temperate Japonica | 334 | 98.20% | 1.80% |
| Tropical Japonica | 94 | 90.43% | 9.57% |
| Japonica Intermediate | 65 | 92.31% | 7.69% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1219829358 | G->A | INTERGENIC | None |