Detailed information of SNP:
|
SNP ID:
sf1219849882(Gbrowse)
Chromosome: chr12 Position: 19849882 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1411 | 87.88% | 12.12% |
| All Indica | 792 | 82.83% | 17.17% |
| All Japonica | 497 | 96.38% | 3.62% |
| Aus | 66 | 84.85% | 15.15% |
| Indica I | 370 | 95.14% | 4.86% |
| Indica II | 213 | 61.97% | 38.03% |
| Indica Intermediate | 209 | 82.30% | 17.70% |
| Temperate Japonica | 335 | 95.82% | 4.18% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1219849882 | A->G | INTERGENIC | None |