Detailed information of SNP:
|
SNP ID:
sf1219878153(Gbrowse)
Chromosome: chr12 Position: 19878153 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 73.13% | 26.87% |
| All Indica | 799 | 59.70% | 40.30% |
| All Japonica | 497 | 98.39% | 1.61% |
| Aus | 67 | 34.33% | 65.67% |
| Indica I | 375 | 41.87% | 58.13% |
| Indica II | 213 | 87.79% | 12.21% |
| Indica Intermediate | 211 | 63.03% | 36.97% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 82.93% | 17.07% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1219878153 | G->T | INTERGENIC | None |