Detailed information of SNP:
|
SNP ID:
sf1219880323(Gbrowse)
Chromosome: chr12 Position: 19880323 |
Major allele:
C
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1258 | 92.61% | 7.39% |
| All Indica | 785 | 99.75% | 0.25% |
| All Japonica | 354 | 74.29% | 25.71% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 372 | 99.73% | 0.27% |
| Indica II | 211 | 99.53% | 0.47% |
| Indica Intermediate | 202 | 100.00% | 0.00% |
| Temperate Japonica | 235 | 62.55% | 37.45% |
| Tropical Japonica | 69 | 100.00% | 0.00% |
| Japonica Intermediate | 50 | 94.00% | 6.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 38 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1219880323 | A->C | INTERGENIC | None |