Detailed information of SNP:
|
SNP ID:
sf1219881709(Gbrowse)
Chromosome: chr12 Position: 19881709 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1269 | 96.38% | 3.62% |
| All Indica | 683 | 93.70% | 6.30% |
| All Japonica | 494 | 100.00% | 0.00% |
| Aus | 42 | 97.62% | 2.38% |
| Indica I | 344 | 96.51% | 3.49% |
| Indica II | 155 | 88.39% | 11.61% |
| Indica Intermediate | 184 | 92.93% | 7.07% |
| Temperate Japonica | 333 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 36 | 94.44% | 5.56% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1219881709 | A->C | INTERGENIC | None |