Detailed information of SNP:
|
SNP ID:
sf1219881753(Gbrowse)
Chromosome: chr12 Position: 19881753 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 59.58% | 40.42% |
| All Indica | 799 | 94.37% | 5.63% |
| All Japonica | 497 | 2.62% | 97.38% |
| Aus | 64 | 85.94% | 14.06% |
| Indica I | 375 | 96.80% | 3.20% |
| Indica II | 213 | 96.71% | 3.29% |
| Indica Intermediate | 211 | 87.68% | 12.32% |
| Temperate Japonica | 335 | 2.09% | 97.91% |
| Tropical Japonica | 94 | 3.19% | 96.81% |
| Japonica Intermediate | 68 | 4.41% | 95.59% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 48.78% | 51.22% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1219881753 | T->C | INTERGENIC | None |