Detailed information of SNP:
|
SNP ID:
sf1219883182(Gbrowse)
Chromosome: chr12 Position: 19883182 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 58.60% | 41.40% |
| All Indica | 799 | 92.49% | 7.51% |
| All Japonica | 497 | 2.62% | 97.38% |
| Aus | 66 | 90.91% | 9.09% |
| Indica I | 375 | 96.80% | 3.20% |
| Indica II | 213 | 91.08% | 8.92% |
| Indica Intermediate | 211 | 86.26% | 13.74% |
| Temperate Japonica | 335 | 2.09% | 97.91% |
| Tropical Japonica | 94 | 3.19% | 96.81% |
| Japonica Intermediate | 68 | 4.41% | 95.59% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 45.24% | 54.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1219883182 | G->A | INTERGENIC | None |