Detailed information of SNP:
|
SNP ID:
sf1219891228(Gbrowse)
Chromosome: chr12 Position: 19891228 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 57.52% | 42.48% |
| All Indica | 799 | 92.87% | 7.13% |
| All Japonica | 497 | 2.62% | 97.38% |
| Aus | 67 | 62.69% | 37.31% |
| Indica I | 375 | 94.67% | 5.33% |
| Indica II | 213 | 97.18% | 2.82% |
| Indica Intermediate | 211 | 85.31% | 14.69% |
| Temperate Japonica | 335 | 2.09% | 97.91% |
| Tropical Japonica | 94 | 3.19% | 96.81% |
| Japonica Intermediate | 68 | 4.41% | 95.59% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 40 | 45.00% | 55.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1219891228 | C->T | INTERGENIC | None |