Detailed information of SNP:
|
SNP ID:
sf1219909333(Gbrowse)
Chromosome: chr12 Position: 19909333 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1361 | 72.01% | 27.99% |
| All Indica | 794 | 95.47% | 4.53% |
| All Japonica | 448 | 30.36% | 69.64% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 373 | 97.05% | 2.95% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 208 | 89.90% | 10.10% |
| Temperate Japonica | 299 | 40.13% | 59.87% |
| Tropical Japonica | 87 | 4.60% | 95.40% |
| Japonica Intermediate | 62 | 19.35% | 80.65% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 38 | 63.16% | 36.84% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1219909333 | C->T | LOC_Os12g33000(LOC_Os12g33000.1) | Synonymous |