Detailed information of SNP:
|
SNP ID:
sf1219915136(Gbrowse)
Chromosome: chr12 Position: 19915136 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 59.69% | 40.31% |
| All Indica | 799 | 94.49% | 5.51% |
| All Japonica | 497 | 3.62% | 96.38% |
| Aus | 67 | 74.63% | 25.37% |
| Indica I | 375 | 96.53% | 3.47% |
| Indica II | 213 | 97.18% | 2.82% |
| Indica Intermediate | 211 | 88.15% | 11.85% |
| Temperate Japonica | 335 | 3.28% | 96.72% |
| Tropical Japonica | 94 | 3.19% | 96.81% |
| Japonica Intermediate | 68 | 5.88% | 94.12% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1219915136 | A->G | INTERGENIC | None |