Detailed information of SNP:
|
SNP ID:
sf1219918774(Gbrowse)
Chromosome: chr12 Position: 19918774 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1299 | 78.75% | 21.25% |
| All Indica | 788 | 96.95% | 3.05% |
| All Japonica | 398 | 41.46% | 58.54% |
| Aus | 64 | 96.88% | 3.12% |
| Indica I | 373 | 97.32% | 2.68% |
| Indica II | 212 | 99.53% | 0.47% |
| Indica Intermediate | 203 | 93.60% | 6.40% |
| Temperate Japonica | 267 | 52.81% | 47.19% |
| Tropical Japonica | 74 | 9.46% | 90.54% |
| Japonica Intermediate | 57 | 29.82% | 70.18% |
| Group VI/Aromatic | 11 | 9.09% | 90.91% |
| Intermediate | 38 | 81.58% | 18.42% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1219918774 | G->T | INTERGENIC | None |