Detailed information of SNP:
|
SNP ID:
sf1219937666(Gbrowse)
Chromosome: chr12 Position: 19937666 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 58.63% | 41.37% |
| All Indica | 799 | 93.99% | 6.01% |
| All Japonica | 497 | 2.82% | 97.18% |
| Aus | 67 | 68.66% | 31.34% |
| Indica I | 375 | 94.93% | 5.07% |
| Indica II | 213 | 95.77% | 4.23% |
| Indica Intermediate | 211 | 90.52% | 9.48% |
| Temperate Japonica | 335 | 2.09% | 97.91% |
| Tropical Japonica | 94 | 3.19% | 96.81% |
| Japonica Intermediate | 68 | 5.88% | 94.12% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 47.62% | 52.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1219937666 | A->G | INTERGENIC | None |