Detailed information of SNP:
|
SNP ID:
sf1219955575(Gbrowse)
Chromosome: chr12 Position: 19955575 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1412 | 59.49% | 40.51% |
| All Indica | 795 | 95.09% | 4.91% |
| All Japonica | 497 | 3.02% | 96.98% |
| Aus | 66 | 69.70% | 30.30% |
| Indica I | 372 | 97.04% | 2.96% |
| Indica II | 212 | 97.17% | 2.83% |
| Indica Intermediate | 211 | 89.57% | 10.43% |
| Temperate Japonica | 335 | 2.39% | 97.61% |
| Tropical Japonica | 94 | 3.19% | 96.81% |
| Japonica Intermediate | 68 | 5.88% | 94.12% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 40 | 55.00% | 45.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1219955575 | A->G | LOC_Os12g33060(LOC_Os12g33060.1) | INTRON |