Detailed information of SNP:
|
SNP ID:
sf1219983284(Gbrowse)
Chromosome: chr12 Position: 19983284 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1409 | 60.04% | 39.96% |
| All Indica | 791 | 45.13% | 54.87% |
| All Japonica | 497 | 81.29% | 18.71% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 369 | 35.77% | 64.23% |
| Indica II | 212 | 58.96% | 41.04% |
| Indica Intermediate | 210 | 47.62% | 52.38% |
| Temperate Japonica | 335 | 97.01% | 2.99% |
| Tropical Japonica | 94 | 25.53% | 74.47% |
| Japonica Intermediate | 68 | 80.88% | 19.12% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 40 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1219983284 | A->G | INTERGENIC | None |