Detailed information of SNP:
|
SNP ID:
sf1219987237(Gbrowse)
Chromosome: chr12 Position: 19987237 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 71.95% | 28.05% |
| All Indica | 799 | 97.62% | 2.38% |
| All Japonica | 497 | 30.78% | 69.22% |
| Aus | 67 | 64.18% | 35.82% |
| Indica I | 375 | 98.67% | 1.33% |
| Indica II | 213 | 95.31% | 4.69% |
| Indica Intermediate | 211 | 98.10% | 1.90% |
| Temperate Japonica | 335 | 12.24% | 87.76% |
| Tropical Japonica | 94 | 81.91% | 18.09% |
| Japonica Intermediate | 68 | 51.47% | 48.53% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 76.19% | 23.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1219987237 | A->G | INTERGENIC | None |