Detailed information of SNP:
|
SNP ID:
sf1219994980(Gbrowse)
Chromosome: chr12 Position: 19994980 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1288 | 99.15% | 0.85% |
| All Indica | 798 | 100.00% | 0.00% |
| All Japonica | 377 | 97.35% | 2.65% |
| Aus | 62 | 100.00% | 0.00% |
| Indica I | 374 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 231 | 96.54% | 3.46% |
| Tropical Japonica | 88 | 100.00% | 0.00% |
| Japonica Intermediate | 58 | 96.55% | 3.45% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 37 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1219994980 | C->G | INTERGENIC | None |