Detailed information of SNP:
|
SNP ID:
sf1220007205(Gbrowse)
Chromosome: chr12 Position: 20007205 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1413 | 58.88% | 41.12% |
| All Indica | 795 | 81.76% | 18.24% |
| All Japonica | 497 | 22.33% | 77.67% |
| Aus | 66 | 53.03% | 46.97% |
| Indica I | 373 | 93.83% | 6.17% |
| Indica II | 212 | 70.28% | 29.72% |
| Indica Intermediate | 210 | 71.90% | 28.10% |
| Temperate Japonica | 335 | 3.28% | 96.72% |
| Tropical Japonica | 94 | 79.79% | 20.21% |
| Japonica Intermediate | 68 | 36.76% | 63.24% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 56.10% | 43.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1220007205 | T->C | INTERGENIC | None |