Detailed information of SNP:
|
SNP ID:
sf1220011780(Gbrowse)
Chromosome: chr12 Position: 20011780 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 74.68% | 25.32% |
| All Indica | 798 | 70.18% | 29.82% |
| All Japonica | 497 | 81.09% | 18.91% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 375 | 48.27% | 51.73% |
| Indica II | 212 | 95.75% | 4.25% |
| Indica Intermediate | 211 | 83.41% | 16.59% |
| Temperate Japonica | 335 | 97.61% | 2.39% |
| Tropical Japonica | 94 | 22.34% | 77.66% |
| Japonica Intermediate | 68 | 80.88% | 19.12% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1220011780 | G->T | LOC_Os12g33110(LOC_Os12g33110.1) | INTRON |