Detailed information of SNP:
|
SNP ID:
sf1220030702(Gbrowse)
Chromosome: chr12 Position: 20030702 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1322 | 98.56% | 1.44% |
| All Indica | 797 | 99.87% | 0.13% |
| All Japonica | 407 | 95.58% | 4.42% |
| Aus | 65 | 100.00% | 0.00% |
| Indica I | 374 | 99.73% | 0.27% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 210 | 100.00% | 0.00% |
| Temperate Japonica | 253 | 93.28% | 6.72% |
| Tropical Japonica | 93 | 100.00% | 0.00% |
| Japonica Intermediate | 61 | 98.36% | 1.64% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1220030702 | C->T | LOC_Os12g33150(LOC_Os12g33150.1) | INTRON |