Detailed information of SNP:
|
SNP ID:
sf1220030917(Gbrowse)
Chromosome: chr12 Position: 20030917 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1414 | 73.97% | 26.03% |
| All Indica | 794 | 69.27% | 30.73% |
| All Japonica | 497 | 80.68% | 19.32% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 371 | 49.06% | 50.94% |
| Indica II | 213 | 89.67% | 10.33% |
| Indica Intermediate | 210 | 84.29% | 15.71% |
| Temperate Japonica | 335 | 97.61% | 2.39% |
| Tropical Japonica | 94 | 21.28% | 78.72% |
| Japonica Intermediate | 68 | 79.41% | 20.59% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1220030917 | A->T | LOC_Os12g33150(LOC_Os12g33150.1) | Non-Synonymous SNP |