Detailed information of SNP:
|
SNP ID:
sf1220035307(Gbrowse)
Chromosome: chr12 Position: 20035307 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1361 | 63.34% | 36.66% |
| All Indica | 779 | 94.22% | 5.78% |
| All Japonica | 462 | 12.12% | 87.88% |
| Aus | 65 | 52.31% | 47.69% |
| Indica I | 361 | 91.69% | 8.31% |
| Indica II | 210 | 96.67% | 3.33% |
| Indica Intermediate | 208 | 96.15% | 3.85% |
| Temperate Japonica | 314 | 4.14% | 95.86% |
| Tropical Japonica | 85 | 41.18% | 58.82% |
| Japonica Intermediate | 63 | 12.70% | 87.30% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 41 | 68.29% | 31.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1220035307 | T->C | LOC_Os12g33160(LOC_Os12g33160.1) | Non-Synonymous SNP |