Detailed information of SNP:
|
SNP ID:
sf1220041778(Gbrowse)
Chromosome: chr12 Position: 20041778 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1377 | 68.77% | 31.23% |
| All Indica | 759 | 47.43% | 52.57% |
| All Japonica | 496 | 98.19% | 1.81% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 357 | 55.74% | 44.26% |
| Indica II | 205 | 35.61% | 64.39% |
| Indica Intermediate | 197 | 44.67% | 55.33% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 93 | 95.70% | 4.30% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1220041778 | C->T | INTERGENIC | None |