Detailed information of SNP:
|
SNP ID:
sf1220049753(Gbrowse)
Chromosome: chr12 Position: 20049753 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1344 | 88.69% | 11.31% |
| All Indica | 730 | 88.36% | 11.64% |
| All Japonica | 494 | 93.32% | 6.68% |
| Aus | 65 | 66.15% | 33.85% |
| Indica I | 349 | 89.97% | 10.03% |
| Indica II | 180 | 92.78% | 7.22% |
| Indica Intermediate | 201 | 81.59% | 18.41% |
| Temperate Japonica | 334 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 74.47% | 25.53% |
| Japonica Intermediate | 66 | 89.39% | 10.61% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 41 | 78.05% | 21.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1220049753 | A->G | LOC_Os12g33180(LOC_Os12g33180.1) | UTR_3_PRIME |