Detailed information of SNP:
|
SNP ID:
sf1220064061(Gbrowse)
Chromosome: chr12 Position: 20064061 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1272 | 98.43% | 1.57% |
| All Indica | 797 | 100.00% | 0.00% |
| All Japonica | 362 | 94.48% | 5.52% |
| Aus | 63 | 100.00% | 0.00% |
| Indica I | 374 | 100.00% | 0.00% |
| Indica II | 212 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 218 | 91.74% | 8.26% |
| Tropical Japonica | 89 | 100.00% | 0.00% |
| Japonica Intermediate | 55 | 96.36% | 3.64% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 36 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1220064061 | A->G | INTERGENIC | None |