Detailed information of SNP:
|
SNP ID:
sf1220065069(Gbrowse)
Chromosome: chr12 Position: 20065069 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 50.11% | 49.89% |
| All Indica | 798 | 60.65% | 39.35% |
| All Japonica | 496 | 27.22% | 72.78% |
| Aus | 67 | 83.58% | 16.42% |
| Indica I | 375 | 63.73% | 36.27% |
| Indica II | 212 | 56.60% | 43.40% |
| Indica Intermediate | 211 | 59.24% | 40.76% |
| Temperate Japonica | 335 | 7.76% | 92.24% |
| Tropical Japonica | 93 | 81.72% | 18.28% |
| Japonica Intermediate | 68 | 48.53% | 51.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1220065069 | G->C | INTERGENIC | None |