Detailed information of SNP:
|
SNP ID:
sf1220095186(Gbrowse)
Chromosome: chr12 Position: 20095186 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1252 | 66.21% | 33.79% |
| All Indica | 677 | 47.42% | 52.58% |
| All Japonica | 470 | 97.02% | 2.98% |
| Aus | 57 | 43.86% | 56.14% |
| Indica I | 313 | 54.95% | 45.05% |
| Indica II | 187 | 36.90% | 63.10% |
| Indica Intermediate | 177 | 45.20% | 54.80% |
| Temperate Japonica | 333 | 100.00% | 0.00% |
| Tropical Japonica | 73 | 80.82% | 19.18% |
| Japonica Intermediate | 64 | 100.00% | 0.00% |
| Group VI/Aromatic | 10 | 40.00% | 60.00% |
| Intermediate | 38 | 60.53% | 39.47% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1220095186 | G->A | LOC_Os12g33260(LOC_Os12g33260.1) | Non-Synonymous SNP |