Detailed information of SNP:
|
SNP ID:
sf1220095678(Gbrowse)
Chromosome: chr12 Position: 20095678 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1415 | 70.46% | 29.54% |
| All Indica | 796 | 98.62% | 1.38% |
| All Japonica | 497 | 22.54% | 77.46% |
| Aus | 67 | 85.07% | 14.93% |
| Indica I | 372 | 98.66% | 1.34% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 335 | 3.58% | 96.42% |
| Tropical Japonica | 94 | 80.85% | 19.15% |
| Japonica Intermediate | 68 | 35.29% | 64.71% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 73.17% | 26.83% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1220095678 | C->T | INTERGENIC | None |