Detailed information of SNP:
|
SNP ID:
sf1220100208(Gbrowse)
Chromosome: chr12 Position: 20100208 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1412 | 59.07% | 40.93% |
| All Indica | 797 | 82.06% | 17.94% |
| All Japonica | 493 | 17.85% | 82.15% |
| Aus | 67 | 80.60% | 19.40% |
| Indica I | 374 | 95.19% | 4.81% |
| Indica II | 213 | 60.56% | 39.44% |
| Indica Intermediate | 210 | 80.48% | 19.52% |
| Temperate Japonica | 334 | 2.99% | 97.01% |
| Tropical Japonica | 94 | 71.28% | 28.72% |
| Japonica Intermediate | 65 | 16.92% | 83.08% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 41 | 65.85% | 34.15% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1220100208 | A->G | LOC_Os12g33280(LOC_Os12g33280.1) | Synonymous |