Detailed information of SNP:
|
SNP ID:
sf1220120032(Gbrowse)
Chromosome: chr12 Position: 20120032 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1389 | 84.59% | 15.41% |
| All Indica | 774 | 76.23% | 23.77% |
| All Japonica | 492 | 96.14% | 3.86% |
| Aus | 67 | 89.55% | 10.45% |
| Indica I | 358 | 81.01% | 18.99% |
| Indica II | 209 | 75.12% | 24.88% |
| Indica Intermediate | 207 | 69.08% | 30.92% |
| Temperate Japonica | 334 | 98.80% | 1.20% |
| Tropical Japonica | 90 | 90.00% | 10.00% |
| Japonica Intermediate | 68 | 91.18% | 8.82% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1220120032 | A->G | INTERGENIC | None |