Detailed information of SNP:
|
SNP ID:
sf1220138294(Gbrowse)
Chromosome: chr12 Position: 20138294 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1364 | 85.78% | 14.22% |
| All Indica | 752 | 76.73% | 23.27% |
| All Japonica | 492 | 98.37% | 1.63% |
| Aus | 64 | 95.31% | 4.69% |
| Indica I | 349 | 70.20% | 29.80% |
| Indica II | 205 | 84.39% | 15.61% |
| Indica Intermediate | 198 | 80.30% | 19.70% |
| Temperate Japonica | 334 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 94.68% | 5.32% |
| Japonica Intermediate | 64 | 96.88% | 3.12% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1220138294 | G->A | LOC_Os12g33340(LOC_Os12g33340.1) | INTRON |