Detailed information of SNP:



SNP ID: sf1220138767(Gbrowse)

Chromosome: chr12

Position: 20138767
Major allele: G

Minor allele: A

Reference allele: A

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of G(major allele)Frequency of A(minor allele)
All1368 52.27% 47.73%
All Indica766 82.64% 17.36%
All Japonica483 4.14% 95.86%
Aus66 59.09% 40.91%
Indica I363 87.05% 12.95%
Indica II201 75.62% 24.38%
Indica Intermediate202 81.68% 18.32%
Temperate Japonica335 0.90% 99.10%
Tropical Japonica81 18.52% 81.48%
Japonica Intermediate67 2.99% 97.01%
Group VI/Aromatic12 41.67% 58.33%
Intermediate41 43.90% 56.10%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf1220138767 A->G LOC_Os12g33340(LOC_Os12g33340.1) Synonymous