Detailed information of SNP:
|
SNP ID:
sf1220138767(Gbrowse)
Chromosome: chr12 Position: 20138767 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1368 | 52.27% | 47.73% |
| All Indica | 766 | 82.64% | 17.36% |
| All Japonica | 483 | 4.14% | 95.86% |
| Aus | 66 | 59.09% | 40.91% |
| Indica I | 363 | 87.05% | 12.95% |
| Indica II | 201 | 75.62% | 24.38% |
| Indica Intermediate | 202 | 81.68% | 18.32% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 81 | 18.52% | 81.48% |
| Japonica Intermediate | 67 | 2.99% | 97.01% |
| Group VI/Aromatic | 12 | 41.67% | 58.33% |
| Intermediate | 41 | 43.90% | 56.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1220138767 | A->G | LOC_Os12g33340(LOC_Os12g33340.1) | Synonymous |