Detailed information of SNP:
|
SNP ID:
sf1220143887(Gbrowse)
Chromosome: chr12 Position: 20143887 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1401 | 71.09% | 28.91% |
| All Indica | 786 | 51.78% | 48.22% |
| All Japonica | 496 | 98.59% | 1.41% |
| Aus | 63 | 79.37% | 20.63% |
| Indica I | 367 | 63.49% | 36.51% |
| Indica II | 212 | 36.79% | 63.21% |
| Indica Intermediate | 207 | 46.38% | 53.62% |
| Temperate Japonica | 334 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1220143887 | A->G | LOC_Os12g33360(LOC_Os12g33360.1) | Synonymous |