Detailed information of SNP:
|
SNP ID:
sf1220145069(Gbrowse)
Chromosome: chr12 Position: 20145069 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1414 | 94.34% | 5.66% |
| All Indica | 797 | 98.49% | 1.51% |
| All Japonica | 495 | 86.87% | 13.13% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 98.13% | 1.87% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 210 | 99.52% | 0.48% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 93 | 48.39% | 51.61% |
| Japonica Intermediate | 67 | 82.09% | 17.91% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1220145069 | C->T | LOC_Os12g33360(LOC_Os12g33360.1) | Synonymous |