Detailed information of SNP:
|
SNP ID:
sf1220145463(Gbrowse)
Chromosome: chr12 Position: 20145463 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1394 | 68.51% | 31.49% |
| All Indica | 786 | 60.69% | 39.31% |
| All Japonica | 495 | 86.06% | 13.94% |
| Aus | 59 | 23.73% | 76.27% |
| Indica I | 366 | 73.22% | 26.78% |
| Indica II | 210 | 42.86% | 57.14% |
| Indica Intermediate | 210 | 56.67% | 43.33% |
| Temperate Japonica | 334 | 98.80% | 1.20% |
| Tropical Japonica | 93 | 43.01% | 56.99% |
| Japonica Intermediate | 68 | 82.35% | 17.65% |
| Group VI/Aromatic | 13 | 76.92% | 23.08% |
| Intermediate | 41 | 68.29% | 31.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1220145463 | T->A | LOC_Os12g33360(LOC_Os12g33360.1) | Non-Synonymous SNP |