Detailed information of SNP:
|
SNP ID:
sf1220145697(Gbrowse)
Chromosome: chr12 Position: 20145697 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1382 | 54.12% | 45.88% |
| All Indica | 770 | 73.90% | 26.10% |
| All Japonica | 489 | 18.81% | 81.19% |
| Aus | 67 | 85.07% | 14.93% |
| Indica I | 364 | 67.86% | 32.14% |
| Indica II | 206 | 83.98% | 16.02% |
| Indica Intermediate | 200 | 74.50% | 25.50% |
| Temperate Japonica | 331 | 3.02% | 96.98% |
| Tropical Japonica | 92 | 69.57% | 30.43% |
| Japonica Intermediate | 66 | 27.27% | 72.73% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1220145697 | G->A | LOC_Os12g33360(LOC_Os12g33360.1) | Non-Synonymous SNP |