Detailed information of SNP:
|
SNP ID:
sf1220147475(Gbrowse)
Chromosome: chr12 Position: 20147475 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1394 | 84.15% | 15.85% |
| All Indica | 777 | 75.29% | 24.71% |
| All Japonica | 497 | 98.39% | 1.61% |
| Aus | 65 | 78.46% | 21.54% |
| Indica I | 368 | 88.86% | 11.14% |
| Indica II | 206 | 52.43% | 47.57% |
| Indica Intermediate | 203 | 73.89% | 26.11% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 94.68% | 5.32% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 85.37% | 14.63% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1220147475 | A->G | LOC_Os12g33360(LOC_Os12g33360.1) | Non-Synonymous SNP |