Detailed information of SNP:
|
SNP ID:
sf1220150690(Gbrowse)
Chromosome: chr12 Position: 20150690 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1366 | 57.03% | 42.97% |
| All Indica | 763 | 82.31% | 17.69% |
| All Japonica | 481 | 11.02% | 88.98% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 352 | 75.85% | 24.15% |
| Indica II | 210 | 89.52% | 10.48% |
| Indica Intermediate | 201 | 86.07% | 13.93% |
| Temperate Japonica | 335 | 2.99% | 97.01% |
| Tropical Japonica | 83 | 40.96% | 59.04% |
| Japonica Intermediate | 63 | 14.29% | 85.71% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 41 | 51.22% | 48.78% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1220150690 | T->C | INTERGENIC | None |