Detailed information of SNP:
|
SNP ID:
sf1220153635(Gbrowse)
Chromosome: chr12 Position: 20153635 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1377 | 90.70% | 9.30% |
| All Indica | 758 | 83.91% | 16.09% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 363 | 93.94% | 6.06% |
| Indica II | 193 | 67.88% | 32.12% |
| Indica Intermediate | 202 | 81.19% | 18.81% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1220153635 | G->A | LOC_Os12g33370(LOC_Os12g33370.1) | Synonymous |