Detailed information of SNP:
|
SNP ID:
sf1220157097(Gbrowse)
Chromosome: chr12 Position: 20157097 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1412 | 93.63% | 6.37% |
| All Indica | 799 | 99.50% | 0.50% |
| All Japonica | 490 | 83.06% | 16.94% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 333 | 98.20% | 1.80% |
| Tropical Japonica | 93 | 38.71% | 61.29% |
| Japonica Intermediate | 64 | 68.75% | 31.25% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1220157097 | G->A | LOC_Os12g33380(LOC_Os12g33380.1) | Non-Synonymous SNP |