Detailed information of SNP:
|
SNP ID:
sf1220157511(Gbrowse)
Chromosome: chr12 Position: 20157511 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1405 | 60.36% | 39.64% |
| All Indica | 794 | 41.18% | 58.82% |
| All Japonica | 489 | 85.69% | 14.31% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 373 | 27.88% | 72.12% |
| Indica II | 213 | 58.22% | 41.78% |
| Indica Intermediate | 208 | 47.60% | 52.40% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 88 | 42.05% | 57.95% |
| Japonica Intermediate | 66 | 78.79% | 21.21% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 68.29% | 31.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1220157511 | T->C | INTERGENIC | None |