Detailed information of SNP:
|
SNP ID:
sf1220157988(Gbrowse)
Chromosome: chr12 Position: 20157988 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1410 | 59.08% | 40.92% |
| All Indica | 794 | 91.56% | 8.44% |
| All Japonica | 494 | 4.25% | 95.75% |
| Aus | 66 | 89.39% | 10.61% |
| Indica I | 373 | 93.03% | 6.97% |
| Indica II | 212 | 91.51% | 8.49% |
| Indica Intermediate | 209 | 89.00% | 11.00% |
| Temperate Japonica | 333 | 1.20% | 98.80% |
| Tropical Japonica | 93 | 12.90% | 87.10% |
| Japonica Intermediate | 68 | 7.35% | 92.65% |
| Group VI/Aromatic | 14 | 28.57% | 71.43% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1220157988 | T->C | INTERGENIC | None |